HL_8BPO_034

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8BPO|1|A1|G|2421, 8BPO|1|A1|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_034 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1902

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8BPO|1|A1|A|2420
8BPO|1|A1|G|2421
8BPO|1|A1|C|2422
8BPO|1|A1|A|2423
8BPO|1|A1|G|2424
8BPO|1|A1|U|2425
8BPO|1|A1|U|2426

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain O2

60S ribosomal protein L17

Chain Q2

60S ribosomal protein L19

Chain k2

60S ribosomal protein L39-like