HL_8BPO_035

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_035 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.156

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BPO|1|A1|C|2458
8BPO|1|A1|G|2459
8BPO|1|A1|A|2460
8BPO|1|A1|G|2461
8BPO|1|A1|C|2462
8BPO|1|A1|G|2463

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain M2

Ribosomal protein L15

Chain i2

Ribosomal protein L37