HL_8BPO_040
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUCUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 8BPO|1|A1|U|2631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BPO_040 not in the Motif Atlas
- Homologous match to HL_8C3A_037
- Geometric discrepancy: 0.1815
- The information below is about HL_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8BPO|1|A1|G|2624
8BPO|1|A1|U|2625
8BPO|1|A1|U|2626
8BPO|1|A1|C|2627
8BPO|1|A1|U|2628
8BPO|1|A1|C|2629
8BPO|1|A1|U|2630
8BPO|1|A1|U|2631
8BPO|1|A1|U|2632
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain D1
- Nascent polypeptide-associated complex subunit alpha N-terminal region
- Chain Q2
- 60S ribosomal protein L19
- Chain T2
- 60S ribosomal protein L22
Coloring options: