HL_8BPO_042
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUUCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BPO_042 not in the Motif Atlas
- Geometric match to HL_2Y9H_003
- Geometric discrepancy: 0.1771
- The information below is about HL_2Y9H_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
8BPO|1|A1|G|2705
8BPO|1|A1|G|2706
8BPO|1|A1|U|2707
8BPO|1|A1|U|2708
8BPO|1|A1|C|2709
8BPO|1|A1|C|2710
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain D1
- Nascent polypeptide-associated complex subunit alpha N-terminal region
- Chain Q2
- 60S ribosomal protein L19
- Chain W2
- Ribosomal_L23eN domain-containing protein
- Chain s2
- S phase cyclin A-associated protein in the endoplasmic reticulum
Coloring options: