HL_8BPO_054

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8BPO|1|A1|A|3876, 8BPO|1|A1|A|3877, 8BPO|1|A1|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_054 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0665

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8BPO|1|A1|G|3873
8BPO|1|A1|G|3874
8BPO|1|A1|G|3875
8BPO|1|A1|A|3876
8BPO|1|A1|A|3877
8BPO|1|A1|C|3878
8BPO|1|A1|G|3879
8BPO|1|A1|G|3880
8BPO|1|A1|G|3881
8BPO|1|A1|C|3882

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain d2

Ribosomal protein L32