HL_8BPO_069

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8BPO|1|A1|G|4694, 8BPO|1|A1|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.064

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BPO|1|A1|C|4688
8BPO|1|A1|U|4689
8BPO|1|A1|G|4690
8BPO|1|A1|A|4691
8BPO|1|A1|A|4692
8BPO|1|A1|C|4693
8BPO|1|A1|G|4694
8BPO|1|A1|C|4695
8BPO|1|A1|C|4696
8BPO|1|A1|U|4697
8BPO|1|A1|C|4698
8BPO|1|A1|U|4699
8BPO|1|A1|A|4700
8BPO|1|A1|A|4701
8BPO|1|A1|G|4702

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain H2

60S ribosomal protein L9

Chain N2

60S ribosomal protein L13a

Chain l2

Ubiquitin-60S ribosomal protein L40