HL_8BPO_071

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

8BPO|1|A1|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BPO_071 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2137

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8BPO|1|A1|C|4906
8BPO|1|A1|G|4907
8BPO|1|A1|G|4908
8BPO|1|A1|A|4909
8BPO|1|A1|A|4910
8BPO|1|A1|A|4911
8BPO|1|A1|G|4912
8BPO|1|A1|G|4913
8BPO|1|A1|G|4914
8BPO|1|A1|G|4915

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain N2

60S ribosomal protein L13a