HL_8BPO_080

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UACGAAA

Length

7 nucleotides

Bulged bases

8BPO|1|A1|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|U|1364
8BPO|1|A1|A|1368
8BPO|1|A1|C|1369
8BPO|1|A1|G|1370
8BPO|1|A1|A|1371
8BPO|1|A1|A|1372
8BPO|1|A1|A|1373

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C1

5.8S ribosomal RNA; 5.8S rRNA

Chain C2

60S ribosomal protein L4

Chain K2

60S ribosomal protein L13

Chain M2

Ribosomal protein L15

Chain X2

Ribosomal protein L26