HL_8BRM_002
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CCCGCCCG
- Length
- 8 nucleotides
- Bulged bases
- 8BRM|1|LD|C|76
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BRM_002 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.1816
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
8BRM|1|LD|C|74
8BRM|1|LD|C|75
8BRM|1|LD|C|76
8BRM|1|LD|G|77
8BRM|1|LD|C|78
8BRM|1|LD|C|79
8BRM|1|LD|C|80
8BRM|1|LD|G|81
Current chains
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain LG
- Ribosomal protein L39
- Chain LZ
- Ribosomal protein L26
- Chain Li
- Ribosomal protein L29
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
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