HL_8BRM_003

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_003 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1278

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8BRM|1|LD|C|108
8BRM|1|LD|A|109
8BRM|1|LD|G|110
8BRM|1|LD|C|111
8BRM|1|LD|G|112

Current chains

Chain LD

5.8S rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LY

Ribosomal protein L23A

Chain Lk

Ribosomal protein L37

Chain Lt

Large subunit ribosomal RNA; LSU rRNA