HL_8BRM_005

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGUUCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_005 not in the Motif Atlas

Homologous match to HL_7RQB_070

Geometric discrepancy: 0.1833

The information below is about HL_7RQB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87939.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8BRM|1|LE|C|36
8BRM|1|LE|G|37
8BRM|1|LE|U|38
8BRM|1|LE|U|39
8BRM|1|LE|C|40
8BRM|1|LE|C|41
8BRM|1|LE|G|42

Current chains

Chain LE

5S rRNA

Nearby chains

Chain LF

Ribosomal protein L5

Chain LL

Ribosomal protein L11

Chain Lt

Large subunit ribosomal RNA; LSU rRNA