HL_8BRM_011

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCCGAGGG

Length

8 nucleotides

Bulged bases

8BRM|1|Lt|G|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_011 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3455

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8BRM|1|Lt|C|161
8BRM|1|Lt|C|162
8BRM|1|Lt|C|163
8BRM|1|Lt|G|164
8BRM|1|Lt|A|165
8BRM|1|Lt|G|166
8BRM|1|Lt|G|167
8BRM|1|Lt|G|168

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LZ

Ribosomal protein L26

Chain Lf

Ribosomal protein L32