HL_8BRM_015
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGCGCGGCCC
- Length
- 10 nucleotides
- Bulged bases
- 8BRM|1|Lt|G|256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BRM_015 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.0998
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8BRM|1|Lt|G|255
8BRM|1|Lt|G|256
8BRM|1|Lt|C|257
8BRM|1|Lt|G|258
8BRM|1|Lt|C|259
8BRM|1|Lt|G|260
8BRM|1|Lt|G|261
8BRM|1|Lt|C|262
8BRM|1|Lt|C|263
8BRM|1|Lt|C|264
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LO
- Ribosomal protein L15
- Chain Lb
- Ribosomal protein L27a
- Chain Lj
- Ribosomal protein L36-1
- Chain Lp
- Ribosomal protein L44
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