HL_8BRM_024

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_024 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.1226

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BRM|1|Lt|C|561
8BRM|1|Lt|G|562
8BRM|1|Lt|A|563
8BRM|1|Lt|A|564
8BRM|1|Lt|A|565
8BRM|1|Lt|G|566

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain SM

Ribosomal protein S11

Chain SP

Ribosomal protein S13

Chain St

Small subunit ribosomal RNA; SSU rRNA