HL_8BRM_039

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGGAGACUC

Length

10 nucleotides

Bulged bases

8BRM|1|Lt|C|1279, 8BRM|1|Lt|U|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_039 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.254

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BRM|1|Lt|G|1272
8BRM|1|Lt|C|1273
8BRM|1|Lt|G|1274
8BRM|1|Lt|G|1275
8BRM|1|Lt|A|1276
8BRM|1|Lt|G|1277
8BRM|1|Lt|A|1278
8BRM|1|Lt|C|1279
8BRM|1|Lt|U|1280
8BRM|1|Lt|C|1281

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LS

Ribosomal protein L19

Chain LY

Ribosomal protein L23A

Chain Lh

Ribosomal protein L34