HL_8BRM_054

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8BRM|1|Lt|A|1860, 8BRM|1|Lt|A|1861, 8BRM|1|Lt|C|1862

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_054 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1265

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8BRM|1|Lt|G|1857
8BRM|1|Lt|G|1858
8BRM|1|Lt|G|1859
8BRM|1|Lt|A|1860
8BRM|1|Lt|A|1861
8BRM|1|Lt|C|1862
8BRM|1|Lt|G|1863
8BRM|1|Lt|G|1864
8BRM|1|Lt|G|1865
8BRM|1|Lt|C|1866

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain Lf

Ribosomal protein L32