HL_8BRM_055

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGCGCAGCGCACAGGGGAGGCCGCGCCCCUGAGACACCCUGACG

Length

45 nucleotides

Bulged bases

8BRM|1|Lt|C|1960, 8BRM|1|Lt|G|1961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|C|1938
8BRM|1|Lt|G|1939
8BRM|1|Lt|G|1940
8BRM|1|Lt|C|1941
8BRM|1|Lt|G|1942
8BRM|1|Lt|C|1943
8BRM|1|Lt|A|1944
8BRM|1|Lt|G|1945
8BRM|1|Lt|C|1946
8BRM|1|Lt|G|1947
8BRM|1|Lt|C|1948
8BRM|1|Lt|A|1949
8BRM|1|Lt|C|1950
8BRM|1|Lt|A|1951
8BRM|1|Lt|G|1952
8BRM|1|Lt|G|1953
8BRM|1|Lt|G|1954
8BRM|1|Lt|G|1955
8BRM|1|Lt|A|1956
8BRM|1|Lt|G|1957
8BRM|1|Lt|G|1958
8BRM|1|Lt|C|1959
8BRM|1|Lt|C|1960
8BRM|1|Lt|G|1961
8BRM|1|Lt|C|1962
8BRM|1|Lt|G|1963
8BRM|1|Lt|C|1964
8BRM|1|Lt|C|1965
8BRM|1|Lt|C|1966
8BRM|1|Lt|C|1967
8BRM|1|Lt|U|1968
8BRM|1|Lt|G|1969
8BRM|1|Lt|A|1970
8BRM|1|Lt|G|1971
8BRM|1|Lt|A|1972
8BRM|1|Lt|C|1973
8BRM|1|Lt|A|1974
8BRM|1|Lt|C|1975
8BRM|1|Lt|C|1976
8BRM|1|Lt|C|1977
8BRM|1|Lt|U|1978
8BRM|1|Lt|G|1979
8BRM|1|Lt|A|1980
8BRM|1|Lt|C|1981
8BRM|1|Lt|G|1982

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Ln

Ribosomal protein L10a