HL_8BRM_056

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGUCGCGC

Length

8 nucleotides

Bulged bases

8BRM|1|Lt|C|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_056 not in the Motif Atlas

Geometric match to HL_3AKZ_010

Geometric discrepancy: 0.3365

The information below is about HL_3AKZ_010

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

8BRM|1|Lt|G|2005
8BRM|1|Lt|G|2006
8BRM|1|Lt|U|2007
8BRM|1|Lt|C|2008
8BRM|1|Lt|G|2009
8BRM|1|Lt|C|2010
8BRM|1|Lt|G|2011
8BRM|1|Lt|C|2012

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LI

Ribosomal protein L7a

Chain LY

Ribosomal protein L23A