HL_8BRM_060

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_060 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1811

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8BRM|1|Lt|C|2117
8BRM|1|Lt|A|2118
8BRM|1|Lt|G|2119
8BRM|1|Lt|A|2120
8BRM|1|Lt|A|2121
8BRM|1|Lt|G|2122
8BRM|1|Lt|G|2123
8BRM|1|Lt|G|2124

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LU

Ribosomal protein L21