HL_8BRM_061
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CCCCCGUGCCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BRM_061 not in the Motif Atlas
- Geometric match to HL_2AKE_002
- Geometric discrepancy: 0.3825
- The information below is about HL_2AKE_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8BRM|1|Lt|C|2147
8BRM|1|Lt|C|2148
8BRM|1|Lt|C|2149
8BRM|1|Lt|C|2150
8BRM|1|Lt|C|2151
8BRM|1|Lt|G|2152
8BRM|1|Lt|U|2153
8BRM|1|Lt|G|2154
8BRM|1|Lt|C|2155
8BRM|1|Lt|C|2156
8BRM|1|Lt|G|2157
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LR
- Ribosomal protein L18
- Chain LU
- Ribosomal protein L21
- Chain Lb
- Ribosomal protein L27a
- Chain Lp
- Ribosomal protein L44
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