HL_8BRM_071

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGCGCCCCAGCCCCGUGCCCCGUCGCCGAG

Length

30 nucleotides

Bulged bases

8BRM|1|Lt|G|2573, 8BRM|1|Lt|C|2574, 8BRM|1|Lt|A|2580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|C|2572
8BRM|1|Lt|G|2573
8BRM|1|Lt|C|2574
8BRM|1|Lt|G|2575
8BRM|1|Lt|C|2576
8BRM|1|Lt|C|2577
8BRM|1|Lt|C|2578
8BRM|1|Lt|C|2579
8BRM|1|Lt|A|2580
8BRM|1|Lt|G|2581
8BRM|1|Lt|C|2582
8BRM|1|Lt|C|2583
8BRM|1|Lt|C|2584
8BRM|1|Lt|C|2585
8BRM|1|Lt|G|2586
8BRM|1|Lt|U|2587
8BRM|1|Lt|G|2588
8BRM|1|Lt|C|2589
8BRM|1|Lt|C|2590
8BRM|1|Lt|C|2591
8BRM|1|Lt|C|2592
8BRM|1|Lt|G|2593
8BRM|1|Lt|U|2594
8BRM|1|Lt|C|2595
8BRM|1|Lt|G|2596
8BRM|1|Lt|C|2597
8BRM|1|Lt|C|2598
8BRM|1|Lt|G|2599
8BRM|1|Lt|A|2600
8BRM|1|Lt|G|2601

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LJ

Ribosomal protein L6

Chain LN

Ribosomal protein L14

Chain LP

Ribosomal protein L13a

Chain LT

Ribosomal protein L18a

Chain Lg

Ribosomal protein L35a