HL_8BRM_074

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUCGAUCCUGC

Length

11 nucleotides

Bulged bases

8BRM|1|St|C|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_074 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.1374

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BRM|1|St|G|7
8BRM|1|St|U|8
8BRM|1|St|C|9
8BRM|1|St|G|10
8BRM|1|St|A|11
8BRM|1|St|U|12
8BRM|1|St|C|13
8BRM|1|St|C|14
8BRM|1|St|U|15
8BRM|1|St|G|16
8BRM|1|St|C|17

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SB

Ribosomal protein S2

Chain SO

Ribosomal protein S23