HL_8BRM_077

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGCGAGC

Length

7 nucleotides

Bulged bases

8BRM|1|St|G|187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_077 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1312

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8BRM|1|St|G|182
8BRM|1|St|G|183
8BRM|1|St|C|184
8BRM|1|St|G|185
8BRM|1|St|A|186
8BRM|1|St|G|187
8BRM|1|St|C|188

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SG

Ribosomal protein S6

Chain SM

Ribosomal protein S11