HL_8BRM_081

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8BRM|1|St|A|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_081 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1867

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8BRM|1|St|C|327
8BRM|1|St|C|328
8BRM|1|St|A|329
8BRM|1|St|A|330
8BRM|1|St|G|331
8BRM|1|St|G|332

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LW

Ribosomal protein L23

Chain SG

Ribosomal protein S6