HL_8BRM_086

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGCUCCAGG

Length

9 nucleotides

Bulged bases

8BRM|1|St|G|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_086 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1723

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8BRM|1|St|C|543
8BRM|1|St|G|544
8BRM|1|St|C|545
8BRM|1|St|U|546
8BRM|1|St|C|547
8BRM|1|St|C|548
8BRM|1|St|A|549
8BRM|1|St|G|550
8BRM|1|St|G|551

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SK

Ribosomal protein S9

Chain Sb

Ribosomal protein S24