HL_8BRM_088

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGGUGAAACAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|C|653
8BRM|1|St|G|654
8BRM|1|St|G|655
8BRM|1|St|G|656
8BRM|1|St|U|657
8BRM|1|St|G|658
8BRM|1|St|A|659
8BRM|1|St|A|660
8BRM|1|St|A|661
8BRM|1|St|C|662
8BRM|1|St|A|663
8BRM|1|St|G|664

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SF

Ribosomal protein S5

Chain SQ

Ribosomal protein S14

Chain Sd

Ribosomal protein S26