HL_8BRM_096

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_096 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1447

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BRM|1|St|C|1038
8BRM|1|St|G|1039
8BRM|1|St|C|1040
8BRM|1|St|G|1041
8BRM|1|St|A|1042
8BRM|1|St|G|1043

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SA

Ribosomal protein SA

Chain SB

Ribosomal protein S2