HL_8BRM_098

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGGCGCC

Length

7 nucleotides

Bulged bases

8BRM|1|St|C|1087, 8BRM|1|St|G|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_098 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1072

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BRM|1|St|G|1084
8BRM|1|St|G|1085
8BRM|1|St|G|1086
8BRM|1|St|C|1087
8BRM|1|St|G|1088
8BRM|1|St|C|1089
8BRM|1|St|C|1090

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SC

Ribosomal protein S3

Chain ST

Ribosomal protein S16

Chain SX

Ribosomal protein S20