HL_8BRM_102
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GCCCCCACC
- Length
- 9 nucleotides
- Bulged bases
- 8BRM|1|St|C|1289
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BRM_102 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.2897
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8BRM|1|St|G|1282
8BRM|1|St|C|1283
8BRM|1|St|C|1284
8BRM|1|St|C|1285
8BRM|1|St|C|1286
8BRM|1|St|C|1287
8BRM|1|St|A|1288
8BRM|1|St|C|1289
8BRM|1|St|C|1290
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain ST
- Ribosomal protein S16
- Chain SW
- Ribosomal protein S19e
- Chain SX
- Ribosomal protein S20
- Chain Sh
- Ribosomal protein S29A
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