HL_8BRM_107

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCUGGGGCGGC

Length

11 nucleotides

Bulged bases

8BRM|1|Lt|G|2042

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_107 not in the Motif Atlas

Geometric match to HL_7KGA_001

Geometric discrepancy: 0.3711

The information below is about HL_7KGA_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8BRM|1|Lt|G|2039
8BRM|1|Lt|C|2040
8BRM|1|Lt|U|2041
8BRM|1|Lt|G|2042
8BRM|1|Lt|G|2043
8BRM|1|Lt|G|2044
8BRM|1|Lt|G|2045
8BRM|1|Lt|C|2046
8BRM|1|Lt|G|2047
8BRM|1|Lt|G|2048
8BRM|1|Lt|C|2049

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lc

Ribosomal protein L29