HL_8BTK_004

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_004 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2595

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BTK|1|A2|C|196
8BTK|1|A2|U|197
8BTK|1|A2|U|198
8BTK|1|A2|C|199
8BTK|1|A2|G|200
8BTK|1|A2|C|201
8BTK|1|A2|G|202
8BTK|1|A2|G|203

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8