HL_8BTK_013

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

8BTK|1|A2|U|574

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2261

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BTK|1|A2|A|570
8BTK|1|A2|C|571
8BTK|1|A2|U|572
8BTK|1|A2|PSU|573
8BTK|1|A2|U|574
8BTK|1|A2|A|575
8BTK|1|A2|A|576
8BTK|1|A2|A2M|577
8BTK|1|A2|U|578
8BTK|1|A2|C|579
8BTK|1|A2|C|580
8BTK|1|A2|U|581
8BTK|1|A2|U|582

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24