HL_8BTK_026

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_026 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.0894

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BTK|1|A2|A|1354
8BTK|1|A2|G|1355
8BTK|1|A2|C|1356
8BTK|1|A2|G|1357
8BTK|1|A2|A|1358
8BTK|1|A2|U|1359

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AZ

40S ribosomal protein SA

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2