HL_8BTK_031

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

8BTK|1|A2|A|1624

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|G|1614
8BTK|1|A2|A|1615
8BTK|1|A2|U|1616
8BTK|1|A2|U|1617
8BTK|1|A2|G|1618
8BTK|1|A2|C|1619
8BTK|1|A2|A|1620
8BTK|1|A2|A|1621
8BTK|1|A2|U|1622
8BTK|1|A2|U|1623
8BTK|1|A2|A|1624
8BTK|1|A2|U|1625
8BTK|1|A2|PSU|1626
8BTK|1|A2|C|1627

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

uS14

Chain Ao

40S ribosomal protein uS19

Chain Ar

40S ribosomal protein S18

Chain As

40S ribosomal protein S19