HL_8BTK_037
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- G(5MU)(PSU)CGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BTK_037 not in the Motif Atlas
- Homologous match to HL_1FIR_003
- Geometric discrepancy: 0.1398
- The information below is about HL_1FIR_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8BTK|1|AT|G|52
8BTK|1|AT|5MU|53
8BTK|1|AT|PSU|54
8BTK|1|AT|C|55
8BTK|1|AT|G|56
8BTK|1|AT|A|57
8BTK|1|AT|A|58
8BTK|1|AT|U|59
8BTK|1|AT|C|60
Current chains
- Chain AT
- P-site tRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BJ
- Ribosomal protein L11
- Chain Bo
- eL42
Coloring options: