HL_8BTK_042

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8BTK|1|B5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_042 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3271

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8BTK|1|B5|U|204
8BTK|1|B5|C|205
8BTK|1|B5|U|206
8BTK|1|B5|G|207
8BTK|1|B5|A|208
8BTK|1|B5|U|209
8BTK|1|B5|C|210
8BTK|1|B5|G|211

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BY

Ribosomal protein L26

Chain Be

eL32