HL_8BTK_050

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

8BTK|1|B5|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_050 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1105

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8BTK|1|B5|C|862
8BTK|1|B5|G|863
8BTK|1|B5|A|864
8BTK|1|B5|G|865
8BTK|1|B5|A|866
8BTK|1|B5|C|867
8BTK|1|B5|C|868
8BTK|1|B5|U|869
8BTK|1|B5|G|870

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

uL30,60S ribosomal protein L7