HL_8BTK_062

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_062 not in the Motif Atlas

Geometric match to HL_4WSM_210

Geometric discrepancy: 0.382

The information below is about HL_4WSM_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61907.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8BTK|1|B5|C|1702
8BTK|1|B5|G|1703
8BTK|1|B5|A|1704
8BTK|1|B5|A|1705
8BTK|1|B5|A|1706
8BTK|1|B5|C|1707
8BTK|1|B5|G|1708

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ao

40S ribosomal protein uS19

Chain Ar

40S ribosomal protein S18