HL_8BTK_064

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8BTK|1|B5|G|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_064 not in the Motif Atlas

Geometric match to HL_5TBW_025

Geometric discrepancy: 0.1078

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BTK|1|B5|G|1803
8BTK|1|B5|G|1804
8BTK|1|B5|U|1805
8BTK|1|B5|A|1806
8BTK|1|B5|A|1807
8BTK|1|B5|G|1808
8BTK|1|B5|C|1809

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

Ribosomal protein L10