HL_8BTK_071

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

8BTK|1|B5|G|2264, 8BTK|1|B5|A|2266, 8BTK|1|B5|U|2268

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_071 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1917

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8BTK|1|B5|A|2263
8BTK|1|B5|G|2264
8BTK|1|B5|OMC|2265
8BTK|1|B5|A|2266
8BTK|1|B5|OMG|2267
8BTK|1|B5|U|2268
8BTK|1|B5|U|2269

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

uL22

Chain BR

60S ribosomal protein L19

Chain Bl

eL39