HL_8BTK_075
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 8BTK|1|B5|U|2373, 8BTK|1|B5|C|2374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BTK_075 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.1291
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8BTK|1|B5|G|2366
8BTK|1|B5|U|2367
8BTK|1|B5|U|2368
8BTK|1|B5|C|2369
8BTK|1|B5|A|2370
8BTK|1|B5|G|2371
8BTK|1|B5|A|2372
8BTK|1|B5|U|2373
8BTK|1|B5|C|2374
8BTK|1|B5|C|2375
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BR
- 60S ribosomal protein L19
- Chain BX
- Ribosomal_L23eN domain-containing protein
- Chain Bg
- 60S ribosomal protein L34
- Chain SX
- Protein transport protein Sec61 subunit alpha isoform 1
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