HL_8BTK_080

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8BTK|1|B5|C|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_080 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2163

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8BTK|1|B5|G|2548
8BTK|1|B5|G|2549
8BTK|1|B5|U|2550
8BTK|1|B5|U|2551
8BTK|1|B5|C|2552
8BTK|1|B5|C|2553

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain BX

Ribosomal_L23eN domain-containing protein

Chain SX

Protein transport protein Sec61 subunit alpha isoform 1