HL_8BTK_084

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

8BTK|1|B5|U|2717

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_084 not in the Motif Atlas

Homologous match to HL_5TBW_043

Geometric discrepancy: 0.1063

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8BTK|1|B5|C|2715
8BTK|1|B5|U|2716
8BTK|1|B5|U|2717
8BTK|1|B5|C|2718
8BTK|1|B5|OMG|2719
8BTK|1|B5|G|2720

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41

Chain Bp

eL43