HL_8BTK_088

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8BTK|1|B5|C|3405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_088 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.3758

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BTK|1|B5|C|3400
8BTK|1|B5|G|3401
8BTK|1|B5|C|3402
8BTK|1|B5|G|3403
8BTK|1|B5|G|3404
8BTK|1|B5|C|3405
8BTK|1|B5|G|3406

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15