HL_8BTK_103

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_103 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.2979

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BTK|1|B5|U|4243
8BTK|1|B5|OMU|4244
8BTK|1|B5|OMG|4245
8BTK|1|B5|PSU|4246
8BTK|1|B5|U|4247
8BTK|1|B5|C|4248
8BTK|1|B5|A|4249

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3