HL_8BTK_107

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8BTK|1|B5|G|4440

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_107 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.182

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BTK|1|B5|C|4434
8BTK|1|B5|PSU|4435
8BTK|1|B5|G|4436
8BTK|1|B5|A|4437
8BTK|1|B5|A|4438
8BTK|1|B5|C|4439
8BTK|1|B5|G|4440
8BTK|1|B5|C|4441
8BTK|1|B5|C|4442
8BTK|1|B5|U|4443
8BTK|1|B5|C|4444
8BTK|1|B5|U|4445
8BTK|1|B5|A|4446
8BTK|1|B5|A|4447
8BTK|1|B5|G|4448

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

60S ribosomal protein L13a

Chain Bm

Ubiquitin