HL_8BTK_110

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8BTK|1|B5|C|4763, 8BTK|1|B5|U|4765, 8BTK|1|B5|C|4766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_110 not in the Motif Atlas

Homologous match to HL_8C3A_072

Geometric discrepancy: 0.5461

The information below is about HL_8C3A_072

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8BTK|1|B5|C|4760
8BTK|1|B5|U|4761
8BTK|1|B5|C|4762
8BTK|1|B5|C|4763
8BTK|1|B5|C|4764
8BTK|1|B5|U|4765
8BTK|1|B5|C|4766
8BTK|1|B5|G|4767

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain BU

60S ribosomal protein L22