HL_8BTK_126

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

8BTK|1|B5|U|2474

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_126 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2902

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BTK|1|B5|G|2467
8BTK|1|B5|U|2468
8BTK|1|B5|U|2469
8BTK|1|B5|C|2470
8BTK|1|B5|U|2471
8BTK|1|B5|C|2472
8BTK|1|B5|U|2473
8BTK|1|B5|U|2474
8BTK|1|B5|PSU|2475

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain BU

60S ribosomal protein L22