HL_8BTK_128

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

(A2M)GAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_128 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.1546

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8BTK|1|B5|A2M|3456
8BTK|1|B5|G|3457
8BTK|1|B5|A|3458
8BTK|1|B5|A|3459
8BTK|1|B5|A|3460
8BTK|1|B5|U|3461

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bi

60S ribosomal protein L36

Chain Bo

eL42

Chain Bv

Ribosomal protein uL1