HL_8BTK_132

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8BTK|1|A2|U|1301, 8BTK|1|A2|G|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_132 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.1792

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BTK|1|A2|A|1296
8BTK|1|A2|U|1297
8BTK|1|A2|U|1298
8BTK|1|A2|G|1299
8BTK|1|A2|A|1300
8BTK|1|A2|U|1301
8BTK|1|A2|A|1302
8BTK|1|A2|G|1303
8BTK|1|A2|C|1304
8BTK|1|A2|U|1305

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14

Chain Ao

40S ribosomal protein uS19